Metacommunity theory
Microbiomes as Metacommunities: Understanding Host-Associated Microbes
https://www.cell.com/trends/ecology-evolution/fulltext/S0169-5347(18)30210-6#secsect0010
Host selection
Host selection shapes crop microbiome assembly and network complexity
https://nph.onlinelibrary.wiley.com/doi/10.1111/nph.16890
Methodology
FEAST: fast expectation-maximization for microbial source tracking - Nature Methods
https://www.nature.com/articles/s41592-019-0431-xHost-associated microbe PCR (hamPCR) enables convenient measurement of both microbial load and community composition | eLife
https://elifesciences.org/articles/66186#content
Human microbiome
Pre-digest of unprotected DNA by Benzonase improves the representation of living skin bacteria and efficiently depletes host DNA | Microbiome | Full Text
https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-021-01067-0
Review articles
The Chemistry of Stress: Understanding the ‘Cry for Help’ of Plant Roots
https://www.mdpi.com/2218-1989/11/6/357The Pathobiome in Animal and Plant Diseases
https://www.sciencedirect.com/science/article/pii/S0169534719302241
Good papers - Subscribe
Kremer et al. 2021. Nat. Methods
https://www.nature.com/articles/s41596-021-00504-6Chen et al., 2020. Nature
https://www.nature.com/articles/s41586-020-2185-0
Good papers - Open access
Coyte et al., 2021. PLoS Biol.
https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.3001116#sec002Berg et al., 2020. Microbiome
https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-020-00875-0Ma et al., 2020. Microbiome
https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-020-00857-2Luke R. Thompson et al., 2017. Nature
https://www.nature.com/articles/nature24621Seybold et al., 2020. Nat. Commun.
https://www.nature.com/articles/s41467-020-15633-x